Helpful websites

What is complexity? https://complexityexplained.github.io
Explore complexity http://www.complexity-explorables.org

Videos

TED Ed on the structure of pollination networks: https://www.youtube.com/watch?v=Y5uRVv7GGQM.
Indirect effects in ecological networks: How wolves changed rivers.
Veritasium’s video on 6 degrees of separation
Veritasium’s video on rare events and scale-free distributions
Veritasium’s video on: The Internet Was Weeks Away From Disaster and No One Knew. In 18:42 they explain data compression, which has the same theoretical basis as Infomap (minimizing bits).

Relevant courses

3Blue1Brown’s Essence of Linear Algebra series.

Podcasts and articles

Online data bases

Web of life ecological networks database https://www.web-of-life.es
mangal ecological networks database https://mangal.io/#/
[EuPPollNet: A European database of plant‐Pollinator Networks](https://euppollendb.org/](http://dx.doi.org/10.1111/geb.70000)
EMLN R package: ecological multilayer networks data set https://ecological-complexity-lab.github.io/emln_package/

Tools

Infomap https://www.mapequation.org
Infomap ecology R package https://ecological-complexity-lab.github.io/infomap_ecology_package/
EMLN R package https://ecological-complexity-lab.github.io/emln_package/
MuxViz package.
[ggnetwork: R visualization] package(https://cran.r-project.org/web/packages/ggnetwork/vignettes/ggnetwork.html)
econullnetr: An R package using null models to analyse the structure of ecological networks and identify resource selection doi:10.1111/2041-210x.12907.
EcoNetGen: generate networks with structre. https://cboettig.github.io/EcoNetGen/

Apps

Papers and books

A dynamic list of papers by topics

Specific papers/books:

Tailoring interaction network types to answer different ecological questions. Download
Barabasi’s Network science book.
Miele V et al. Nine quick tips for analyzing network data. PLoS Comput Biol. doi:10.1371/journal.pcbi.1007434